GgaEX6014581 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr16:53555-54372:-
Coord C1 exon
chr16:54088-54372
Coord A exon
chr16:53894-54013
Coord C2 exon
chr16:53555-53590
Length
120 bp
Sequences
Splice sites
3' ss Seq
TGCTGGCTGTGTCCCTGCAGGTC
3' ss Score
11.96
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
CTCAGCCCCAGGTCCGCATCGTCCCCGCACAGACAGGGAACCCCAGCGTGCCCATCCGCCTCACCTGCCACGTGTGGGGCTTCTACCCCCCCGAGGTGACCATCATCTGGCTACACAATGGGGACATCGTGGGGCCTGGAGACCACTCGCCCATGTTCGCCATCCCCAATGGGAACTGGACCTACCAGACACAGGTGGCCCTCTCGGTGGCCCCAGAGGTGGGGGACACCTACACGTGCTCGGTGCAGCATGCTAGCTTGGAGGAGCCCCTCCTGGAGGACTGGC
Seq A exon
GTCCTGGGCTGACGCTGGAGGTGACGCTGATGGTGGCTGTGGCCACTGTAGTGATGGTGTTGGGGCTCAGCTTGCTCTTCATTGGTGTCTACTGCTGGCGGGCCCAACCCCCTGCCCCAG
Seq C2 exon
GTTACGCCCCGCTTCCCGGTCACAACTACCCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000166-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.047 A=0.000 C2=0.077
Domain overlap (PFAM):
C1:
PF0765410=C1-set=WD(100=87.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGTGTGGGGCTTCTACC
R:
AAGGGTAGTTGTGACCGGGAA
Band lengths:
250-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]