GgaEX6014581 @ galGal4
Exon Skipping
Gene
ENSGALG00000000166 | DMB2
Description
Major histocompatibility complex class II beta chain BMA2, (similar to HLA class II, D beta chain) precursor [Source:RefSeq peptide;Acc:NP_001128638]
Coordinates
chr16:76483-77300:-
Coord C1 exon
chr16:77016-77300
Coord A exon
chr16:76822-76941
Coord C2 exon
chr16:76483-76518
Length
120 bp
Sequences
Splice sites
3' ss Seq
TGCTGGCTGTGTCCCTGCAGGTC
3' ss Score
11.96
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
CTCAGCCCCAGGTCCGCATCGTCCCCGCACAGACAGGGAACCCCAGCGTGCCCATCCGCCTCACCTGCCACGTGTGGGGCTTCTACCCCCCCGAGGTGACCATCATCTGGCTACACAATGGGGACATCGTGGGGCCTGGAGACCACTCGCCCATGTTCGCCATCCCCAATGGGAACTGGACCTACCAGACACAGGTGGCCCTCTCGGTGGCCCCAGAGGTGGGGGACACCTACACGTGCTCGGTGCAGCATGCTAGCTTGGAGGAGCCCCTCCTGGAGGACTGGC
Seq A exon
GTCCTGGGCTGACGCTGGAGGTGACGCTGATGGTGGCTGTGGCCACTGTAGTGATGGTGTTGGGGCTCAGCTTGCTCTTCATTGGTGTCTACTGCTGGCGGGCCCAACCCCCTGCCCCAG
Seq C2 exon
GTTACGCCCCGCTTCCCGGTCACAACTACCCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000166-'13-4,'13-3,14-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.047 A=0.000 C2=0.077
Domain overlap (PFAM):
C1:
PF0765410=C1-set=WD(100=87.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGTGTGGGGCTTCTACC
R:
AAGGGTAGTTGTGACCGGGAA
Band lengths:
250-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]