GgaEX6015169 @ galGal3
Exon Skipping
Gene
ENSGALG00000004165 | TOR1A
Description
NA
Coordinates
chr17:6258693-6259984:-
Coord C1 exon
chr17:6259719-6259984
Coord A exon
chr17:6258912-6259087
Coord C2 exon
chr17:6258693-6258820
Length
176 bp
Sequences
Splice sites
3' ss Seq
CCTGTTTTTATGCTACTCAGGAC
3' ss Score
6.46
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
CGCTGCAGGAGAGCCTGGACAGACGGCTGTTCGGGCAGCACCTGGTCAGCAAGGTGGTGGTCAGGGCCGTGCGGGGCTTCCTCAGCAACGCCCAGGCCAAGAAGCCGCTGGCGCTGTCCCTGCACGGCTGGACGGGCACCGGCAAGAACTTCGTCAGCAAAATCATCGCCGAGAGCATCTATAAGAGGGGGCTGAAGAGTAACTACGTCCATCAGTTCGTGGCTACGCTGCATTTCCCTCACGCTCACAGCATCAACCTCTACAAG
Seq A exon
GACCAATTGCAGTCATGGATTCGGGGAAACGTGAGCATCTGCCCCAGGTCAATCTTCATATTTGATGAAATGGATAAAATGCACGCAGGACTCATTGATGCCATCAAGCCATTTCTGGACTATTATGAGCTTCTGGATGGAGTGTCGTACCGACAAGCCATCTTCATATTCCTCAG
Seq C2 exon
CAACGCCGGAGCTGAAAAGATAACAGAAGTGGCACTCGATTTCTGGAGAAACGGGAAGGAGAGGGAAGATATACAGCTCACAGACATGCAGAACGCGCTGTCTGTGTCTGTCTTCAATAACAGAAATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004165-'1-4,'1-3,2-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF063096=Torsin=FE(69.3=100)
A:
PF063096=Torsin=PD(15.7=33.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCAAGAACTTCGTCAGCAA
R:
GAAGACAGACACAGACAGCGC
Band lengths:
242-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]