DreEX0080648 @ danRer10
Exon Skipping
Gene
ENSDARG00000077950 | tor1
Description
torsin family 1 [Source:ZFIN;Acc:ZDB-GENE-080917-50]
Coordinates
chr21:3628775-3634086:+
Coord C1 exon
chr21:3628775-3629040
Coord A exon
chr21:3631579-3631754
Coord C2 exon
chr21:3633959-3634086
Length
176 bp
Sequences
Splice sites
3' ss Seq
ATGTCTCCTGCGGGGTTTAGACG
3' ss Score
3.57
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
GCCTGAAGTATGACCTGGACACAAAGCTTTATGGGCAGCACGTCGCAGGTCAAGTCATCCTGAAAGCCGTCACGGGCTTCATGAACAACAAAAAACCAAAGAAACCGCTGGTTCTGTCCCTGCACGGCTGGACCGGCACCGGGAAGAACTTTGTGAGCCAACTATTGGCTGAAAACATTTACGTGAAAGGCATGGAGAGCAGCTTCGTCCATCTGTTTACAGCAACAGCACACTTTCCTCATGAGATCCACATAGACACCTACAAG
Seq A exon
ACGCAGTTACAGGATTGGATACGAGGAAACGTTTCCATCTGCCCTCGTTCCATGTTCATTTTCGATGAAATGGATAAAATGCATCCCGGGTTGATCGACAGTATAAAGCCGTACCTGGATTTTTACGATAACCTGAATGGAGTGTCTTACAGAGAGGCCATCTTCATCTTCCTCAG
Seq C2 exon
TAACGCCGGTGGTGAGAACATCGTTCAGGTGGCTCTGGATTTCTGGAAGGACGGCAAAGAACGAGAAGAGATCCAGCTGAAGCATCTGGAGACGGCGCTTTCACTGTCTGTCTTCAACAACAAAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077950_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF063096=Torsin=FE(69.3=100)
A:
PF063096=Torsin=PD(15.7=33.9)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACCGGGAAGAACTTTGTGA
R:
AAGACAGACAGTGAAAGCGCC
Band lengths:
245-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]