MmuEX6100303 @ mm9
Exon Skipping
Gene
ENSMUSG00000026848 | Tor1b
Description
torsin family 1, member B [Source:MGI Symbol;Acc:MGI:1353605]
Coordinates
chr2:30809272-30812095:+
Coord C1 exon
chr2:30809272-30809537
Coord A exon
chr2:30811298-30811473
Coord C2 exon
chr2:30811968-30812095
Length
176 bp
Sequences
Splice sites
3' ss Seq
TCTCTTTGAGGTTGGTCCAGGAC
3' ss Score
0.67
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
Exon sequences
Seq C1 exon
CCCTCAAGCTGGACTTGGAAGAGAAGCTGTTTGGACAGCACCTTGCCACCGAAGTGATTCTCAAGGCATTGACTGGCTTCAGGAACAACAAAAATTCCAAGAAACCATTGACTCTGTCCTTGCACGGCTGGGCTGGCACGGGCAAGAATTTTATCAGCCAGATTGTGGCTGAAAACCTTTATCCAAAAGGCCTGAAGAGTAACTTTGTCCACCTGTTCGTCTCTACTTTGCACTTCCCTCATGAGCAGAAGATAAAGGTGTACCAG
Seq A exon
GACCAGCTCCAGAAGTGGATCCGAGGCAATGTGAGTGCGTGTGGCAGCTCCGTCTTCATCTTTGACGAGATGGATAAGTTGCATCCTGGGATCATTGATGCAATCAAGCCCTTCCTGGACTACTATGAGCAGGTGGATGGGATTTCCTACCGCAGAGCCATCTTCATCTTCCTCAG
Seq C2 exon
CAATGCAGGAGGAGACCTGATCACTAAGACGGCCCTGGACTTCTGGCGGGCAGGAAGAAAAAGGGAGGAGATCCAGCTGAAGGACCTGGAGCCTGTGCTGTCTGTGGGCGTCTTCAACAACAAGCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026848-'3-3,'3-2,6-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.001 A=0.019 C2=0.000
Domain overlap (PFAM):
C1:
PF063096=Torsin=PU(90.2=97.9)
A:
PF063096=Torsin=PD(15.9=33.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCATTGACTGGCTTCAGGAA
R:
AGAAGTCCAGGGCCGTCTTAG
Band lengths:
246-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: