BtaEX6046636 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002837 | TOR1B
Description
torsin family 1, member B (torsin B) [Source:HGNC Symbol;Acc:HGNC:11995]
Coordinates
chr11:100210927-100214936:+
Coord C1 exon
chr11:100210927-100211195
Coord A exon
chr11:100213051-100213226
Coord C2 exon
chr11:100214809-100214936
Length
176 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTATGGTTGGTCCAGGAC
3' ss Score
5.93
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
CAGCCCTCAAGCAGGACTTGGAGGAGAAGCTGTTTGGGCAGCATCTGGCCACAGAGGTGATTCTCAAGGCGCTGACCGGCTTCAAGAACAACAAAAATCCCAAGAAACCACTGACTCTCTCCTTACACGGCTGGGCTGGCACAGGCAAGAATTTTGTCAGCCAAATTGTGGCTGAAAATCTTCACCCCAAAGGCCTGAAGAGCAACTTTGTCCACCTGTTTGTGTCGACCCTGCACTTCCCTCATGAGCAGCACATAAAACTGTATCAG
Seq A exon
GACCAGTTACAGAGGTGGATCCGGGGTAACGTGAGTGCATGTGCGGGCTCTGTGTTCATATTTGATGAGATGGATAAGTTGCACCCGGGAGTCATTGACGCAATCAAGCCGTTCCTGGATTACTACGAGCAGATTGATGGCGTGTCTTACCGGAAGGCCATCTTCATCTTTCTCAG
Seq C2 exon
CAACGCAGGCGGAGACCTCATAACTAAGACGGCCCTTGACTTCTGGCGGGCTGGGAGAAAGAGAGAGGACATCCAGCTGAAGGACCTGGAGGCGGTGCTGTCTGTCGGAGTCTTCAATAACAAACACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002837-'1-3,'1-2,5-3=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF063096=Torsin=PU(80.0=98.9)
A:
PF063096=Torsin=PD(18.2=33.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCTCTCCTTACACGGCTGG
R:
GGTCCTTCAGCTGGATGTCCT
Band lengths:
242-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]