RnoEX0092838 @ rn6
Exon Skipping
Gene
ENSRNOG00000006435 | Tor1b
Description
torsin family 1, member B [Source:RGD Symbol;Acc:1308431]
Coordinates
chr3:9793610-9796548:+
Coord C1 exon
chr3:9793610-9793875
Coord A exon
chr3:9795799-9795974
Coord C2 exon
chr3:9796421-9796548
Length
176 bp
Sequences
Splice sites
3' ss Seq
TCTCTTTGAGGTTGGTCTAGGAC
3' ss Score
1.89
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
Exon sequences
Seq C1 exon
CCCTCAAGCTGGACTTGGAAGAGAAGCTGTTCGGACAGCACCTTGCCACCGAAGTGATTCTCAAGGCATTGACTGGCTTCAGGAACAACAAAAATCCCAAGAAACCACTGACTCTATCCTTGCACGGCTGGGCTGGCACGGGCAAGAATTTTGTCAGCCAGATTGTGGCTGAAAACCTTTATCCAAAAGGCCTGAAGAGTAACTTTGTCCACCTGTTCGTCTCTACTCTGCACTTCCCTCATGAGCAGAAGATAAAACTGTACCAG
Seq A exon
GACCAGCTCCAGAAGTGGATCCGAGGCAACGTGAGCGCGTGCGGCAGCTCCGTTTTCATCTTTGACGAGATGGATAAGTTGCATCCTGGAATCATTGATGCAATCAAGCCCTTCCTGGACTATTATGAGCAGGTGGATGGGATTTCCTACCGCAAAGCCATCTTCATCTTCCTCAG
Seq C2 exon
CAATGCAGGAGGGGACCTGATAACCAAGACGACCCTGGACTTCTGGCGGGCAGGAAGAAAAAGGGAGGAGATCCAGCTGAAGGACCTGGAGCCTGTGCTGTCTGTGGGTGTCTTCAACAACAAGCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006435-'1-4,'1-3,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF063096=Torsin=FE(69.8=100)
A:
PF063096=Torsin=PD(15.9=33.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCACGGGCAAGAATTTTG
R:
GAAGACACCCACAGACAGCAC
Band lengths:
249-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]