GgaEX6015167 @ galGal3
Exon Skipping
Gene
ENSGALG00000004180 | TOR1B
Description
NA
Coordinates
chr17:6250585-6253061:+
Coord C1 exon
chr17:6250585-6250850
Coord A exon
chr17:6252110-6252285
Coord C2 exon
chr17:6252934-6253061
Length
176 bp
Sequences
Splice sites
3' ss Seq
CATTTCTCACCTTGTTTCAGGAG
3' ss Score
8.98
5' ss Seq
CAGGTCGGT
5' ss Score
7.53
Exon sequences
Seq C1 exon
CGCTGCGGGAGCAGCTGGACGGCAGGCTGTTCGGGCAGCACCTGGCCAAGGAGGTGGTGCTGCGGGCGGTGACGGGCTTCAGCAACAACCCCAGCCCCAAGAAGCCGCTGACGCTGTCGCTGCACGGCTGGGCCGGCACCGGGAAGAACTTCCTGAGCCAGCTGCTGGCGCGGCACGTGCACCCCGCCGGGCTGCGCAGTAAATTCGTGCACCTCTTCCTGGCCACGCTGCACTTCCCGCACCCGCAGCGCGTGCCGCTGTACCAG
Seq A exon
GAGCAACTGCAGAACTGGATTCGGGGCAATGTCAGCGCCTGTGCACACTCAGTCTTCATTTTCGATGAGATGGACAAAATGCATCAGGGCCTCATTGATGCCATCAAGCCCTTCTTGGACTACTATGAGCAGGTTGACGGGGTGTCCTACAGGAAAGCCATCTTCATCTTCCTCAG
Seq C2 exon
CAATGCTGGTGGTGACTTAATTAATAAAGCAGCTCTTGACTTCTGGACCAGTGGGAAGCGCAGGGAAGATATTCAGCTGAAAGACCTTGAGCCCATGCTGTCTGTGGGAGTCTTCAATAACAAGAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004180-'1-3,'1-2,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF063096=Torsin=FE(69.3=100)
A:
PF063096=Torsin=PD(15.7=33.9)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACGGGCTTCAGCAACAAC
R:
GGTCCAGAAGTCAAGAGCTGC
Band lengths:
246-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]