GgaEX6015724 @ galGal3
Exon Skipping
Gene
ENSGALG00000023867 | MYH1
Description
NA
Coordinates
chr18:394092-395544:-
Coord C1 exon
chr18:395238-395544
Coord A exon
chr18:394812-394885
Coord C2 exon
chr18:394092-394179
Length
74 bp
Sequences
Splice sites
3' ss Seq
TTTATTTGGCTATTCTACAGAGA
3' ss Score
4.85
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
CCCATGGGCATCTTCTCCATCCTGGAAGAGGAGTGCATGTTCCCCAAGGCAACTGACACCTCTTTCAAGAACAAGCTCTATGACCAGCATCTGGGCAAGTCCAACAACTTCCAGAAGCCTAAACCTGGCAAAGGCAAGGCTGAGGCCCACTTCTCCCTGGTGCACTATGCTGGCACAGTGGACTACAACATCTCTGGCTGGCTTGACAAGAACAAGGACCCCCTGAATGAAACTGTTGTGGGGCTGTACCAAAAATCATCCCTGAAGACACTGGCCTTACTGTTTGCTTCTGCTGGCGGAGAGGCAG
Seq A exon
AGAGTGGTGGTGGTGGCAAGAAGGGAGGCAAGAAGAAGGGTTCTTCTTTCCAGACTGTATCAGCTCTTTTCAGG
Seq C2 exon
GAGAACCTGAACAAGCTGATGACCAACCTACGGAGCACTCACCCCCATTTTGTGCGCTGTATCATCCCTAATGAAACAAAAACTCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023867-'15-14,'15-13,16-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.049 A=0.400 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(14.9=100)
A:
PF0006316=Myosin_head=FE(3.5=100)
C2:
PF0006316=Myosin_head=FE(4.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCTGGCTTGACAAGAACA
R:
CACAAAATGGGGGTGAGTGCT
Band lengths:
168-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]