MmuEX7006814 @ mm10
Exon Skipping
Gene
ENSMUSG00000057003 | Myh4
Description
myosin, heavy polypeptide 4, skeletal muscle [Source:MGI Symbol;Acc:MGI:1339713]
Coordinates
chr11:67248446-67249915:+
Coord C1 exon
chr11:67248446-67248755
Coord A exon
chr11:67249226-67249296
Coord C2 exon
chr11:67249828-67249915
Length
71 bp
Sequences
Splice sites
3' ss Seq
TTTTCTACTCTGCTTTTCAGAGG
3' ss Score
8.65
5' ss Seq
AGGGTACAG
5' ss Score
3.14
Exon sequences
Seq C1 exon
CCGATGGGCATCTTCTCCATCCTGGAAGAGGAGTGCATGTTCCCTAAGGCGACAGACACCTCCTTCAAGAACAAGCTGTATGAGCAGCATCTTGGAAAGTCCAACAACTTCCAGAAGCCCAAACCCGCCAAAGGCAAGGCTGAGGCTCACTTCTCCCTGGTGCACTATGCGGGCACCGTGGACTACAACATTATTGGCTGGCTGGACAAGAACAAGGACCCCCTGAATGAGACCGTGGTGGGGCTGTACCAGAAATCCGGGTTGAAGACTCTGGCTTTCCTATTTTCTGGGGGACAAGCTGCGGAAGCAG
Seq A exon
AGGGCGGCGGTGGAAAGAAAGGTGGCAAGAAGAAGGGTTCTTCTTTCCAGACCGTGTCAGCTCTCTTCAGG
Seq C2 exon
GAGAATTTAAATAAGCTGATGACCAACTTGAAGAGCACCCACCCCCACTTTGTCAGATGCCTCATTCCCAATGAAACTAAGACTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057003-'23-25,'23-16,29-25=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=0.458 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(15.1=100)
A:
PF0006316=Myosin_head=FE(3.4=100)
C2:
PF0006316=Myosin_head=FE(4.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGAACAAGGACCCCCTGA
R:
GAGGCATCTGACAAAGTGGGG
Band lengths:
168-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types