GgaEX6015730 @ galGal4
Exon Skipping
Gene
ENSGALG00000028134 | MYH1B
Description
myosin-3 [Source:RefSeq peptide;Acc:NP_989559]
Coordinates
chr18:486814-487333:-
Coord C1 exon
chr18:487235-487333
Coord A exon
chr18:487030-487133
Coord C2 exon
chr18:486814-486952
Length
104 bp
Sequences
Splice sites
3' ss Seq
TTCCCTCTTCTTACTTTCAGACA
3' ss Score
10.48
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
ATCTATTGGAGAAGTCTAGAGTCACTTTTCAGCTGAAGGCAGAAAGAAGCTACCACATATTTTATCAAATTATGTCCAACAAGAAACCAGAGCTAATTG
Seq A exon
ACATGCTTCTAATTACCACCAATCCATACGACTATCACTTTGTGAGTCAAGGTGAGATCACTGTTCCCAGCATTAATGATCAAGAGGAGCTGATGGCTACAGAT
Seq C2 exon
AGTGCCATTGACATCCTGGGCTTTACTGCCGATGAAAAAGTGGCTATTTACAAGCTGACAGGAGCTGTCATGCACTATGGCAACCTGAAGTTCAAGCAGAAACAAAGAGAAGAGCAAGCAGAGCCAGATGGCACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028134-'14-16,'14-15,16-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.213
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.8=100)
A:
PF0006316=Myosin_head=FE(5.0=100)
C2:
PF0006316=Myosin_head=FE(6.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTATTGGAGAAGTCTAGAGTCACT
R:
CATCTGGCTCTGCTTGCTCTT
Band lengths:
228-332
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]