GgaEX6015780 @ galGal4
Exon Skipping
Gene
ENSGALG00000001111 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr18:1066196-1068533:+
Coord C1 exon
chr18:1066196-1066321
Coord A exon
chr18:1066956-1067195
Coord C2 exon
chr18:1068373-1068533
Length
240 bp
Sequences
Splice sites
3' ss Seq
GAGCCAACCTCTTTCCCCAGGTG
3' ss Score
7.78
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
GTTGAGGTCTGGCTGAATCATGTACTGAACAGCATGAGGGCTACAGTCAGAGATGAGATGACAGAAGCTGTAACAGCGTATGAGGAGAAGCCGAGGGAACAGTGGCTCTTTGATTACCCTGCTCAG
Seq A exon
GTGGCTCTGTGCTGCACCCAGATTTGGTGGACGACTGAGGTTGGGATTGCCTTCGCCAGGGTGGAGGAAGGCTACGAGAATGCCATGAAGGAATATCACAAGAAGCAAGTGACCCAGCTGAACACCCTCGTTACCATGCTAATTGGGCAGCTCTCCAAGGGTGACAGGCAGAAAATCATGACGATATGCACCATTGATGTGCACGCTCGGGATGTGGTAGCAAAGATGATAGCACAGAAG
Seq C2 exon
GTGGACAACGCGCAGGCGTTCGTTTGGCTGTCGCAGCTCCGACACAGGTGGTCAGATGAGGAGCGGCACTGCTTCGCCAACATCTGCGATGCCCAGTTCCTCTACTCCTATGAGTATCTTGGCAATACCCCTCGGCTTGTGATCACTCCACTGACAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111-'15-16,'15-15,16-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=PD(6.5=64.3)
A:
NO
C2:
PF127742=AAA_6=PU(8.2=35.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGTCTGGCTGAATCATGT
R:
TGTCTGTCAGTGGAGTGATCACA
Band lengths:
284-524
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]