DreEX6020667 @ danRer10
Exon Skipping
Gene
ENSDARG00000062630 | dnah9l
Description
dynein, axonemal, heavy polypeptide 9 like [Source:ZFIN;Acc:ZDB-GENE-050506-1]
Coordinates
chr6:10423904-10427087:-
Coord C1 exon
chr6:10426962-10427087
Coord A exon
chr6:10424118-10424225
Coord C2 exon
chr6:10423904-10424035
Length
108 bp
Sequences
Splice sites
3' ss Seq
TTTGTGTGTTTGGTCTTAAGGTG
3' ss Score
8.2
5' ss Seq
CAGGTACGC
5' ss Score
10.12
Exon sequences
Seq C1 exon
GCAGAGTGTTGGCTGAATGCTCTGGAGAAGGCCATGTGCTCTACTGTTCGGCAGGAGATCTCTGAAGCTGTGGCCGCATATGAAGACAAGCCAAGAGATCAGTGGCTGTTTGACTACCCAGCACAG
Seq A exon
GTGGCGTTGACTGGAAGCCAAATATGGTGGGCGACAGATGTGGGCATTGCTTTTGAGAGGGTGGAGGAAGGTTTTGAGACTGCCCTGAAAGACTACAACCGAAAACAG
Seq C2 exon
ATCAGTCAGCTGAACTCTCTGATAAACATGTTACTGGGTGAACTCACTCCTGGAGACAGACAAAAGATCATGACCATCTCCACTATCGATGTCCACGCTCGAGATGTAGTTGCTAAACTCATATCTCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062630-'25-27,'25-26,26-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=PD(6.5=64.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAGTGTTGGCTGAATGCT
R:
TTAGCAACTACATCTCGAGCGTG
Band lengths:
242-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]