BtaEX6090391 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000920 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr19:54353273-54354322:+
Coord C1 exon
chr19:54353273-54353398
Coord A exon
chr19:54353574-54353681
Coord C2 exon
chr19:54354191-54354322
Length
108 bp
Sequences
Splice sites
3' ss Seq
GGGGCCCCCTCTGTTTCCAGATC
3' ss Score
9.69
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
GTAGAGGTCTGGCTGAACCGGGTGCTGGACAGGATGTGTGCCACGCTCCGCCACGAGATCCCCGAAGCTGTGGTGACCTATGAGGAGAAGCCAAGGGAGCAGTGGATCTTTGACTACCCCGCCCAG
Seq A exon
ATCGCGCTCACGTGCACCCAAATCTGGTGGGCCACCGAGGTGGGCTTGGCGTTTGCCAGGCTGGAGGAAGGCTACGAAAATGCCATCAAAGATTACAACAAGAAGCAG
Seq C2 exon
ATCAGCCAGCTCAACGCGCTCATCACTCTGCTCATTGGAAACCTCAGTGCAGGGGACAGAATGAAGATCATGACCATCTGTACCATCGATGTCCACGCCCGGGACGTGGTAGCCAAGATGATCACCGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000920-'30-33,'30-32,31-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=PD(6.5=64.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAGAGGTCTGGCTGAACCG
R:
GCGGTGATCATCTTGGCTACC
Band lengths:
254-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]