RnoEX0028480 @ rn6
Exon Skipping
Gene
ENSRNOG00000003028 | Dnah17
Description
dynein, axonemal, heavy chain 17 [Source:RGD Symbol;Acc:1563805]
Coordinates
chr10:107098452-107100321:-
Coord C1 exon
chr10:107100196-107100321
Coord A exon
chr10:107099516-107099602
Coord C2 exon
chr10:107098452-107098577
Length
87 bp
Sequences
Splice sites
3' ss Seq
TGGCGCTGACATGCACGCAGATC
3' ss Score
4.47
5' ss Seq
CAGGTTTGG
5' ss Score
5.63
Exon sequences
Seq C1 exon
GTGGAAGTGTGGCTGAATCGAGTGCTGGACCGAATGTGTGCCACGTTGCGCCACGAAATCCCAGAAGCTGTGGTGACTTACGAGGAGAAGCCCAGGGAGCAATGGATCTTTGACTACCCGGCCCAG
Seq A exon
ATCTGGTGGACGACTGAGGTGGGCCTGGCGTTCGCAAGGCTGGAGGAAGGATATGAAAACGCCATCAAAGACTACAACAAAAAGCAG
Seq C2 exon
ATCAGCCAGCTGAATGCGCTCATTACTCTGCTCATCGGGAACCTCAGCGCTGGTGACAGGATGAAGATTATGACCATCTGCACCATCGATGTGCATGCCCGAGACGTGGTGGCCAAGATGATCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003028-'33-38,'33-37,34-38
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=PD(6.5=64.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTACGAGGAGAAGCCCAGG
R:
GGTGATCATCTTGGCCACCAC
Band lengths:
177-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]