GgaEX7009577 @ galGal4
Exon Skipping
Gene
ENSGALG00000007106 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr18:10080197-10080764:+
Coord C1 exon
chr18:10080197-10080322
Coord A exon
chr18:10080407-10080514
Coord C2 exon
chr18:10080633-10080764
Length
108 bp
Sequences
Splice sites
3' ss Seq
GTCTGCTTAATTGATTGCAGGTT
3' ss Score
6.95
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
GTGGAGGTGTGGCTGAACCGCGTGCTGGACAGCATGCGCTCCACGCTGCGGCACCTGATCCCCGAGGCCGTGGCCAGCTATGAGGACAAGCCACGGGAGCAGTGGGTGTTTGACTACCCGGCACAG
Seq A exon
GTTGCTCTGACCTGCACCCAGATCTGGTGGACCACAGAAGTCGGCATGGCCTTCGCAAGGCTGGAGGAGGGCTATGAAAATGCAATTAAGGACTACAACAAAAAGCAG
Seq C2 exon
ATCACTCAGCTGAACGCGCTGATCTCGCTGCTCATTGGGAACTTGTCTGCGGGAGACAGAATGAAGATCATGACGATCTGCACCATCGATGTGCACGCCAGAGACGTCGTGGCCAAAATGATCCTCACGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007106-'35-35,'35-34,36-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=PD(6.5=64.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAGGTGTGGCTGAACC
R:
TCATTTTGGCCACGACGTCTC
Band lengths:
247-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]