HsaEX0020170 @ hg38
Exon Skipping
Gene
ENSG00000187775 | DNAH17
Description
dynein axonemal heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr17:78501748-78503011:-
Coord C1 exon
chr17:78502886-78503011
Coord A exon
chr17:78502591-78502698
Coord C2 exon
chr17:78501748-78501873
Length
108 bp
Sequences
Splice sites
3' ss Seq
TGGGGGGTATGTACTTTCAGGTG
3' ss Score
6.44
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
GTGGAAGTGTGGCTGAATCGAGTGCTGGACCGAATGTGCTCTACCCTCCGGCACGAAATCCCAGAGGCCGTGGTGACCTACGAAGAGAAGCCGAGGGAGCAGTGGATCCTGGACTACCCAGCCCAG
Seq A exon
GTGGCCCTGACTTGCACCCAGATCTGGTGGACGACCGAGGTGGGCCTGGCATTTGCCAGGCTGGAGGAAGGCTATGAAAACGCTATCAGAGATTATAACAAAAAGCAG
Seq C2 exon
ATTAGCCAGCTGAACGTACTCATCACGCTGCTCATGGGGAACCTCAACGCTGGCGACAGGATGAAGATCATGACCATCTGCACCATCGATGTGCACGCACGGGACGTGGTGGCCAAAATGATCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187775-'42-55,'42-52,43-55
Average complexity
S
Mappability confidence:
90%=100=83%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=PD(30.7=64.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTGTGGCTGAATCGAGTGC
R:
ATCATTTTGGCCACCACGTCC
Band lengths:
244-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development