HsaEX0020170 @ hg19
Exon Skipping
Gene
ENSG00000187775 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:2946]
Coordinates
chr17:76497833-76499093:-
Coord C1 exon
chr17:76498968-76499093
Coord A exon
chr17:76498673-76498780
Coord C2 exon
chr17:76497833-76497955
Length
108 bp
Sequences
Splice sites
3' ss Seq
TGGGGGGTATGTACTTTCAGGTG
3' ss Score
6.44
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
GTGGAAGTGTGGCTGAATCGAGTGCTGGACCGAATGTGCTCTACCCTCCGGCACGAAATCCCAGAGGCCGTGGTGACCTACGAAGAGAAGCCGAGGGAGCAGTGGATCCTGGACTACCCAGCCCAG
Seq A exon
GTGGCCCTGACTTGCACCCAGATCTGGTGGACGACCGAGGTGGGCCTGGCATTTGCCAGGCTGGAGGAAGGCTATGAAAACGCTATCAGAGATTATAACAAAAAGCAG
Seq C2 exon
ATTAGCCAGCTGAACGTACTCATCACGCTGCTCATGGGGAACCTCAACGCTGGCGACAGGATGAAGATCATGACCATCTGCACCATCGATGTGCACGCACGGGACGTGGTGGCCAAAATGATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187775-'34-38,'34-35,35-38
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=PD(6.5=64.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTGTGGCTGAATCGAGTGC
R:
ATCATTTTGGCCACCACGTCC
Band lengths:
244-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)