MmuEX6091612 @ mm9
Exon Skipping
Gene
ENSMUSG00000033987 | Dnahc17
Description
dynein, axonemal, heavy chain 17 [Source:MGI Symbol;Acc:MGI:1917176]
Coordinates
chr11:117950270-117952833:-
Coord C1 exon
chr11:117952708-117952833
Coord A exon
chr11:117952030-117952137
Coord C2 exon
chr11:117950270-117950395
Length
108 bp
Sequences
Splice sites
3' ss Seq
TTCTTCTGGGTGGTTTCCAGGTG
3' ss Score
9.49
5' ss Seq
CAGGTTTGG
5' ss Score
5.63
Exon sequences
Seq C1 exon
GTGGAAGTGTGGCTGAATCGCGTGCTGGACCGAATGCGCGCCACGTTGCGCCACGAAATTCCAGAAGCCGTGGTGACTTACGAGGAGAAACCGAGGGAACAATGGATCTTTGACTACCCGGCCCAG
Seq A exon
GTGGCGCTGACATGCACGCAGATCTGGTGGACGACGGAGGTGGGCCTGGCGTTCGCAAGGCTGGAGGAAGGCTACGAAAACGCCATCAAAGACTACAACAAAAAGCAG
Seq C2 exon
ATCAGCCAGCTGAATGCGCTCATCACTCTGCTCATTGGAAATCTCACCGCCGGTGACAGGATGAAGATCATGACCATCTGCACCATCGATGTGCACGCCCGAGACGTGGTGGCCAAGATGATCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033987-'34-36,'34-34,35-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=PD(6.5=64.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAGTGTGGCTGAATCGC
R:
GGTGATCATCTTGGCCACCAC
Band lengths:
251-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: