GgaEX6017106 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr19:4188325-4189988:+
Coord C1 exon
chr19:4188325-4188357
Coord A exon
chr19:4189451-4189748
Coord C2 exon
chr19:4189906-4189988
Length
298 bp
Sequences
Splice sites
3' ss Seq
GCGCCGGGCCGTCCTTGCAGAGC
3' ss Score
7.69
5' ss Seq
TGGTCGTCC
5' ss Score
-20.88
Exon sequences
Seq C1 exon
GGACCTCCGAGCCCTCCCCGCCGCCGCTCCCAG
Seq A exon
AGCTGCGCCTGGCCAACGGGCCCAGCCGGTGCCAGGGCCGCGTGGAGATCCTCTACAACGGATCCTGGGGCACGGTGTGCGACGACGACTGGGACATCGTAGACGCCAACGTGGTGTGTCGCCAGCTGGGCTGCGGCCACGCCATCGCCATGCCGGCACCCATGACCTTCGGCCAGGGGAGCGGGCCCATCTTCTTGGACAACGTGGACTGCAAGGGCCAGGAGGCGGCACTGAGCGAGTGCTGGAGCCCACGGGATGGGGCGTCCACAACTGCTACCCACTACGAGGACGTGGCTGG
Seq C2 exon
TCCCTTTCCAGAGCTTTCCCCCACATCAGCAAGCGAAGGACCGACCAGCAGGACTGCCACGGCCTCGGTGCAGAACGGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001917-'3-5,'3-4,4-5=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=0.140 C2=0.828
Domain overlap (PFAM):
C1:
NO
A:
PF0053013=SRCR=WD(100=96.0)
C2:
PF0053013=SRCR=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]