MmuEX6021627 @ mm10
Exon Skipping
Gene
ENSMUSG00000029699 | Ssc4d
Description
scavenger receptor cysteine rich family, 4 domains [Source:MGI Symbol;Acc:MGI:1924709]
Coordinates
chr5:135966075-135968259:-
Coord C1 exon
chr5:135968224-135968259
Coord A exon
chr5:135967738-135968043
Coord C2 exon
chr5:135966075-135966152
Length
306 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTTTTTACAGAAC
3' ss Score
12.01
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
Exon sequences
Seq C1 exon
CCAGTGCCCTCCAGCCCACTCCGCTGCCCTTTCCAG
Seq A exon
AACTGAGGCTGGTAGGGGGCCCGAGCCGCTGCCGAGGGCGCCTCGAGGTCATGCATAGCGGCTCCTGGGGCAGCGTTTGCGACGATGACTGGGACGTTGTAGATGCTAACGTGGTGTGTCGTCAGCTGGGCTGTGGCCTGGCATTGCCGGTGCCACGGCCCCTCGCCTTTGGCCAGGGCAGAGGGCCCATTTTCCTGGATAATGTGGAGTGCCGCGGGCAGGAAGCGTCTCTGAGCGAGTGTGGCAGCAGGGGCTGGGGTGTCCACAACTGCTTTCACTATGAAGATGTGGCAGTCCTGTGTGATG
Seq C2 exon
AATTCTTGCACACACAGCCCCCAACAAGGAAGGTGTTAACCAGTATGGCACCCGCTACAGCCCTCCAAAATGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029699-'3-7,'3-5,4-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.212
Domain overlap (PFAM):
C1:
NO
A:
PF0053013=SRCR=WD(100=95.1)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types