RnoEX6063954 @ rn6
Exon Skipping
Gene
ENSRNOG00000001435 | Ssc4d
Description
scavenger receptor cysteine rich family member with 4 domains [Source:RGD Symbol;Acc:1306970]
Coordinates
chr12:23754868-23756987:+
Coord C1 exon
chr12:23754868-23754903
Coord A exon
chr12:23755058-23755363
Coord C2 exon
chr12:23756910-23756987
Length
306 bp
Sequences
Splice sites
3' ss Seq
TTTGTCTCCGTTTTTTACAGAGC
3' ss Score
10.49
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
Exon sequences
Seq C1 exon
CGAGTGCCCTCCAGCCCACTCCTCTGCCCTTTCCAG
Seq A exon
AGCTGAGGCTGGTAGGGGGTCCAAGCCGCTGCCGAGGGCGCCTGGAGGTCATGCACAGCGGTTCCTGGGGCAGCGTTTGCGACGATGACTGGGACGTTGTGGATGCCAACGTGGTGTGTCGTCAGCTGGGCTGTGGCCTGGCATTGCCGGTGCCGCGGCCCCTCACCTTTGGCCAGGGCAGAGGGCCCATTTTCCTGGATAATGTGGAATGCCGCGGGCAGGAAGCGTCTCTGAGCGAGTGTGGCAGCAGGGGCTGGGGTGTCCACAACTGCTTTCACTATGAAGATGTGGCGGTCCTGTGTGATG
Seq C2 exon
AATTCTTGCATACACAGCCCCCAGCAAGGAAGGTGTTGACCAGTATAGCGCCCCCTACAGCCCTCCAAAATGGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001435-'2-3,'2-2,3-3=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.074
Domain overlap (PFAM):
C1:
NO
A:
PF0053013=SRCR=WD(100=95.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]