GgaEX6018703 @ galGal4
Exon Skipping
Gene
ENSGALG00000007943 | lasp-2
Description
nebulette non-muscle isoform [Source:RefSeq peptide;Acc:NP_989819]
Coordinates
chr2:18007795-18121892:+
Coord C1 exon
chr2:18007795-18007889
Coord A exon
chr2:18079269-18079353
Coord C2 exon
chr2:18121785-18121892
Length
85 bp
Sequences
Splice sites
3' ss Seq
TGTACTTCTTTTTTTTTCAGACA
3' ss Score
10.02
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
TATTGGCATAAAGGATGTTTCCACTGTGAAGTTTGCAAAATGGCTCTGAACATGAATAACTACAAAGGATATGAAAAGAAACCTTATTGCAATGC
Seq A exon
ACATTACCCAAAGCAGTCCTTCACTACAGTGGCTGATACTCCAGAAAATCTACGTCTGAAGCAACAAAGTGAATTGCAGAGTCAG
Seq C2 exon
GTAAAATACAAAAGAGACTTTGAAGAAAGCAAAGGAAGAGGGTTCAGTATTGTGACCGATACGCCCGAGTTACAAAGACTGAAAAGGACTCAGGAACAAATCAGTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007943-'3-8,'3-6,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.259 C2=0.257
Domain overlap (PFAM):
C1:
PF0041217=LIM=FE(54.4=100)
A:
PF0041217=LIM=PD(10.5=20.7),PF0088013=Nebulin=PU(55.2=55.2)
C2:
PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(55.2=44.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCATAAAGGATGTTTCCACTGT
R:
CAGTCTTTGTAACTCGGGCGT
Band lengths:
173-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]