MmuEX6099109 @ mm9
Exon Skipping
Gene
ENSMUSG00000053702 | Nebl
Description
nebulette [Source:MGI Symbol;Acc:MGI:1921353]
Coordinates
chr2:17451537-17651090:-
Coord C1 exon
chr2:17650996-17651090
Coord A exon
chr2:17511720-17511804
Coord C2 exon
chr2:17451537-17451644
Length
85 bp
Sequences
Splice sites
3' ss Seq
AAAAAAATGTTTCTTTGCAGACA
3' ss Score
8.53
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
TATTGGCATAAAGGATGTTTCCACTGCGAGGTCTGCAAGATGGCTCTCAACATGAACAACTACAAAGGCTATGAAAAGAAGCCCTATTGCAATGC
Seq A exon
ACACTACCCAAAGCAGTCCTTCACCACAGTGGCGGATACACCTGAAAACCTTCGCCTGAAGCAGCAAAGTGAACTGCAGAGCCAG
Seq C2 exon
GTCAAGTACAAAAGAGATTTTGAAGAAAGCAAAGGCAGGGGCTTCAGCATTGTCACAGATACTCCTGAGCTGCAGAGGCTGAAGAGGACCCAGGAGCAGATCAGTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053702-'1-2,'1-1,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.322 C2=0.365
Domain overlap (PFAM):
C1:
PF0041217=LIM=FE(54.4=100)
A:
PF0041217=LIM=PD(10.5=20.7),PF0088013=Nebulin=PU(55.2=55.2)
C2:
PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(55.2=44.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTCTGCAAGATGGCTCTCA
R:
ATCTGCTCCTGGGTCCTCTTC
Band lengths:
168-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: