GgaEX6020577 @ galGal3
Exon Skipping
Gene
ENSGALG00000012997 | DNAH5
Description
NA
Coordinates
chr2:78564593-78568828:+
Coord C1 exon
chr2:78564593-78564727
Coord A exon
chr2:78566508-78566630
Coord C2 exon
chr2:78568615-78568828
Length
123 bp
Sequences
Splice sites
3' ss Seq
GGATAATTGTTTTTTCACAGCGC
3' ss Score
6.37
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
GCTGTTCTACTAATTGGTGAGCAAGGAACTGCAAAGACTGTTATTATCAAATGTTTTATGTCGAAATATAACCCTGAAAGCCACATGGCTAAGAGTTTGAATTTTTCTTCTGCAACTACCCCATTAATTTTCCAG
Seq A exon
CGCACAATAGAAAGTTATGTGGACAAGCGCATGGGCACAACATATGGTCCACCTGCAGGCAAAAAGATGACAGTCTTCATTGATGATGTGAATATGCCCATAATAAATGAATGGGGAGATCAG
Seq C2 exon
GTCACTAATGAGATAGTTAGGCAGCTCATGGAACAGAATGGACTGTATAATCTGGAAAAGCCTGGGGAATTTACCAACATTGTGGACATTCAGTTTTTGGCTGCCATGATCCATCCTGGGGGAGGTCGCAATGACATTCCACAGAGACTCAAGAGGCAGTTTTCTGTGTTCAACTGCACTTTGCCTTCTAATTCTTCTATTGACAAAATTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012997-'52-56,'52-55,53-56=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(16.3=100)
A:
PF127752=AAA_7=FE(14.8=100)
C2:
PF127752=AAA_7=FE(26.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAAGGAACTGCAAAGACTGT
R:
TGGAATGTCATTGCGACCTCC
Band lengths:
257-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]