MmuEX6053050 @ mm9
Exon Skipping
Gene
ENSMUSG00000022262 | Dnahc5
Description
dynein, axonemal, heavy chain 5 [Source:MGI Symbol;Acc:MGI:107718]
Coordinates
chr15:28280332-28296112:+
Coord C1 exon
chr15:28280332-28280466
Coord A exon
chr15:28295293-28295415
Coord C2 exon
chr15:28295899-28296112
Length
123 bp
Sequences
Splice sites
3' ss Seq
TTGGTGTTCTTGCTTAACAGAGG
3' ss Score
7.92
5' ss Seq
CAGGTATAT
5' ss Score
7.88
Exon sequences
Seq C1 exon
GCTGTGCTGTTAATTGGTGAGCAAGGGACAGCCAAAACAGTCATCATCAAAGGATTTATGTCAAAATTTGACCCTGAAAGTCACATGGTGAAGAATCTGAACTTTTCTTCGGCGACCACCCCAGTGATGTTTCAG
Seq A exon
AGGACAATAGAGAGCTACGTGGATAAACGCATGGGCACGACATATGGTCCTCCTGCGGGGAAGAAAATGGCTGTCTTTATTGATGATTTAAATATGCCTGTAATCAACGAATGGGGTGATCAG
Seq C2 exon
GTTACTAATGAGATTGTCCGACAGCTGATGGAACAAAGTGGGTTCTATAACCTGGAGAAGCCTGGAGAGTTCACTAGCATTGTGGACATCCAGTTCTTGGCAGCCATGATCCATCCTGGGGGTGGACGCAATGACATACCACAGCGCTTGAAGAGACAGTTCTCCATATTCAACTGTACCTTGCCTTCAGATGCTTCCATGGACAAGATCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022262-'46-47,'46-46,47-47=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(16.1=100)
A:
PF127752=AAA_7=FE(14.7=100)
C2:
PF127752=AAA_7=FE(26.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCAAGGGACAGCCAAAACA
R:
TGGTATGTCATTGCGTCCACC
Band lengths:
258-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: