GgaEX6020588 @ galGal3
Exon Skipping
Gene
ENSGALG00000012997 | DNAH5
Description
NA
Coordinates
chr2:78547920-78551433:+
Coord C1 exon
chr2:78547920-78548098
Coord A exon
chr2:78549034-78549221
Coord C2 exon
chr2:78551239-78551433
Length
188 bp
Sequences
Splice sites
3' ss Seq
AGTTGCTCTTTTCTTTGAAGGTC
3' ss Score
9.05
5' ss Seq
ATGGTACGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
ATGTTACATCACTCTGGCTCAAGCTTTAGGCATGAATATGGGTGGAGCACCTGTGGGGCCTGCAGGAACTGGTAAAACTGAAACCATCAAAGATATGGGACGGTGCCTTGGTAAATATGTAGTTGTCTTCAACTGTTCAGATCAGATGGATTTTCGAGGACTTGGGAGGATCTTCAAAG
Seq A exon
GTCTTGCTCAGTCTGGCTCCTGGGGTTGCTTTGATGAATTCAATCGTATTGATTTACCAGTATTATCAGTAGCTGCACAGCAAATTGCAATTGTGTTGACGTGCAAGAAAGAACATAAGAAAAGCTTTGTTTTTACTGATGGAGATAATGTGGAAATGAACCCTGAATTTGGCATCTTTCTTACTATG
Seq C2 exon
AATCCAGGATATGCTGGACGGCAAGAACTTCCTGAAAACTTGAAGATCAACTTCCGTTCAGTGGCCATGATGGTTCCTGATCGTCAAATTATAATTCGTGTCAAGTTGGCTAGTTGTGGTTTTATTGCTAATGTTGTATTGGCAAGGAAATTCTTTACACTGTACAAGCTCTGCGAAGAACAGCTATCAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012997-'41-45,'41-44,42-45=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.049 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(25.9=100)
A:
PF127742=AAA_6=FE(26.7=100)
C2:
PF127742=AAA_6=FE(27.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCTGGCTCAAGCTTTAGGC
R:
CGATCAGGAACCATCATGGCC
Band lengths:
252-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]