GgaEX6020588 @ galGal4
Exon Skipping
Gene
ENSGALG00000012997 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr2:76641970-76645485:+
Coord C1 exon
chr2:76641970-76642148
Coord A exon
chr2:76643084-76643271
Coord C2 exon
chr2:76645291-76645485
Length
188 bp
Sequences
Splice sites
3' ss Seq
AGTTGCTCTTTTCTTTGAAGGTC
3' ss Score
9.05
5' ss Seq
ATGGTACGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
ATGTTACATCACTCTGGCTCAAGCTTTAGGCATGAATATGGGTGGAGCACCTGTGGGGCCTGCAGGAACTGGTAAAACTGAAACCATCAAAGATATGGGACGGTGCCTTGGTAAATATGTAGTTGTCTTCAACTGTTCAGATCAGATGGATTTTCGAGGACTTGGGAGGATCTTCAAAG
Seq A exon
GTCTTGCTCAGTCTGGCTCCTGGGGTTGCTTTGATGAATTCAATTGTATTGATTTACCAGTATTATCAGTAGCTGCACAGCAAATTGCAATTGTGTTGACGTGCAAGAAAGAACATAAGAAAAGCTTTGTTTTTACTGATGGAGATAATGTGGAAATGAACCCTGAGTTTGGCATCTTTCTTACTATG
Seq C2 exon
AATCCAGGATATGCTGGACGGCAAGAACTTCCTGAAAACTTGAAGATCAACTTCCGTTCAGTGGCCATGATGGTTCCTGATCGTCAAATTATAATTCGTGTCAAGTTGGCTAGTTGTGGTTTTATTGCTAATGTTGTATTGGCAAGGAAATTCTTTACACTGTACAAGCTCTGCGAAGAACAGCTATCAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012997-'36-43,'36-41,37-43=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.025 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(25.9=100)
A:
PF127742=AAA_6=FE(26.7=100)
C2:
PF127742=AAA_6=FE(27.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCTGGCTCAAGCTTTAGGC
R:
CGATCAGGAACCATCATGGCC
Band lengths:
252-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]