GgaEX6020596 @ galGal4
Exon Skipping
Gene
ENSGALG00000012997 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr2:76633954-76635839:+
Coord C1 exon
chr2:76633954-76634194
Coord A exon
chr2:76634690-76634889
Coord C2 exon
chr2:76635686-76635839
Length
200 bp
Sequences
Splice sites
3' ss Seq
ACATTCTATTTATTTAAAAGGAT
3' ss Score
7.04
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
ATGCCATAAGCTTCCTCGTGGTGTAAAGGAGTGGCAGGCCTTTTTTGACCTAAAGAAGACTATTGAAGACTTCTGTGAATGTTGCCCGTTGCTGGAACATATGTCAAGTAAAGCAATGATGCCTCGGCACTGGAAGCGGATAACAGAACTCACTGAACACAACTTTGCTGTAGAAGGTGAAACACTGAGACTGAAGAATATAATGGAGGCTCCTCTACTCAGATATAAAGAGGAAATAGAG
Seq A exon
GATATCTGCATAAGTGCTGTGAAGGAGAGAGACATTGAACAGAAGTTAAAACAAGTGATAGCTGAATGGGATAACAAAACATTTATCTTTGCAAACTTTAAAACCCGTGGGGAACTTCTTCTAAGAGGAGATAGCATATCAGAAACAATTGCTACCATGGAGGACAGCTTGATGATTCTTGGTTCTCTCATGAGTAACAG
Seq C2 exon
ATACAACACGCCCTTCAAGACACAGATTCAGAAATGGGTGCACTATCTTTCCAACACGACAGATATCATTGAGAACTGGATAACTGTGCAGAACTTGTGGATTTATTTAGAAGCTGTTTTTGTTGGTGGTGACATAGCAAAGCAGCTTCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012997-'28-34,'28-33,29-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(19.4=100)
A:
PF083938=DHC_N2=FE(16.0=100)
C2:
PF083938=DHC_N2=FE(12.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCGTTGCTGGAACATATG
R:
AGCTGCTTTGCTATGTCACCA
Band lengths:
306-506
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]