RnoEX0028534 @ rn6
Exon Skipping
Gene
ENSRNOG00000048363 | Dnah5
Description
dynein, axonemal, heavy chain 5 [Source:RGD Symbol;Acc:1560828]
Coordinates
chr2:81025244-81029218:+
Coord C1 exon
chr2:81025244-81025484
Coord A exon
chr2:81027054-81027253
Coord C2 exon
chr2:81029065-81029218
Length
200 bp
Sequences
Splice sites
3' ss Seq
AGAGCTTATTCTGTTCATAGGAC
3' ss Score
6.35
5' ss Seq
TAGGTAGGA
5' ss Score
7
Exon sequences
Seq C1 exon
GTGTCGGAAGCTGCCCCGGGCCCTGAAGGATTGGCAGGCCTTTCTGGACATGAAGAAGACCATTGATGACTTTAGCGAGTGTTGCCCACTGCTGGAGTACATGGCTAGTAACGCCATGGTAGAGAGGCACTGGCAGAGGATAACCACTCTCACTGGGCACAGTCTGGATGTGGGCAATGAAACCTTTAAGTTACGAAATATCATGGAGGTTCCTCTTTTGAAATACAAAGAGGAAATTGAG
Seq A exon
GACATTTGCATCAGTGCAGTGAAGGAGAGAGACATTGAGCAAAAGCTGAAGCAAGTGATCAATGAGTGGGACAACAAAACGTTAACATTCAGCAGCTTTAAGACCCGTGGAGAACTCCTCCTGAGAGGAGACAGTACCTCAGAAGTCATTGCCAGCATGGAGGACAGCTTGATGCTATTGGGCTCTCTCCTGAGCAATAG
Seq C2 exon
GTACAACATGCCATTCAAAGCCCAGATTCAAAACTGGGTTCAATGCCTTTCCAACTCAACAGACATCATTGAGAACTGGATGACCGTTCAAAACTTGTGGATTTATCTAGAAGCTGTCTTCGTGGGAGGAGACATTGCCAAGCAGCTTCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048363-'30-33,'30-32,31-33
Average complexity
C3
Mappability confidence:
88%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(19.4=100)
A:
PF083938=DHC_N2=FE(16.0=100)
C2:
PF083938=DHC_N2=FE(12.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTTTAGCGAGTGTTGCCCA
R:
TGTCTCCTCCCACGAAGACAG
Band lengths:
308-508
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]