GgaEX6020690 @ galGal3
Exon Skipping
Gene
ENSGALG00000013079 | F1NT47_CHICK
Description
NA
Coordinates
chr2:82367085-82371919:+
Coord C1 exon
chr2:82367085-82367139
Coord A exon
chr2:82367721-82367898
Coord C2 exon
chr2:82371804-82371919
Length
178 bp
Sequences
Splice sites
3' ss Seq
CATTGTGCTTTGTATCCTAGAAT
3' ss Score
7.82
5' ss Seq
ATGGTATGT
5' ss Score
8.35
Exon sequences
Seq C1 exon
GAATCACACTCTACAGCCAACCATATGGAGGAGCCTTGCTGGATGAGGACAAAAT
Seq A exon
AATGGAGAATGTTCGTCAGTGTGGGGTAGCACTCTGTATCATGCTGGGTTTCTCCATCCTCACTGCATCCATTGGCAGTGCCATAGTGAAAGACAGAGTATCTGGTACAAAACGGTTGCAACACATCACTGGCCTGGGTTACAAAACATACTGGCTTGCTAATTTCTGCTGTGATATG
Seq C2 exon
CTGTTTTATATGCTTCCCGTCACCCTGTGTGTTGGTGTTATTACTGCCTTCCAGCTATCAGCCTTCACTTTCCGAAATAATTTGGCAGCCACTGTTATCCTGCTGGTTCTCTTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013079-'35-36,'35-35,36-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(4.0=100)
A:
PF126982=ABC2_membrane_3=FE(13.0=100)
C2:
PF126982=ABC2_membrane_3=FE(8.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCACACTCTACAGCCAACCA
R:
CCAAAGAGAACCAGCAGGATAACA
Band lengths:
170-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]