GgaEX6022105 @ galGal3
Exon Skipping
Gene
ENSGALG00000016111 | CSMD3
Description
NA
Coordinates
chr2:139184947-139193505:-
Coord C1 exon
chr2:139193367-139193505
Coord A exon
chr2:139187670-139187857
Coord C2 exon
chr2:139184947-139185135
Length
188 bp
Sequences
Splice sites
3' ss Seq
GGGTCTTTCCTCAATTCCAGATT
3' ss Score
8.96
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
CTCCGTGTGGTGGGCATTTTTCATCTCCCAGTGGAGTAATCCTCTCTCCAGGCTGGCCTGGGTATTATAAAGACTCCTTGAATTGTGAGTGGGTGATAGAAGCTGAACCAGGACACTCTATCAAAATTACATTTGAAAG
Seq A exon
ATTTCAGACAGAACTTAATTATGATGTTTTGGAAGTTCATGATGGACCAAGTTTATTATCTCCACTTCTGGGATCTTACAATGGTACTCAGGTCCCACAATTCCTCTTTAGCAGTAGCAATTTCATTTATCTTCTCTTCACAACTGACAACAGTCGTTCTAACAATGGATTCAAGATTCACTATGAAA
Seq C2 exon
GTGTAACTGTTAATACTTACTCTTGTTTGGATCCTGGCATACCAGTGCATGGACGCCGCTATGGACATGACTTCTCAATAGGCTCCACTGTCTCATTTAGTTGTGATCCAGGTTATAGGCTGAGTCATGAGGAGCCTTTACTATGTGAAAAAAATCACTGGTGGAGTCACCCACTCCCAACTTGTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016111-'16-18,'16-17,17-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(41.5=93.6)
A:
PF0043115=CUB=PD(57.5=95.3)
C2:
PF0008415=Sushi=WD(100=84.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAATCCTCTCTCCAGGCTGGC
R:
AAAGGCTCCTCATGACTCAGC
Band lengths:
242-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]