GgaEX6023684 @ galGal3
Exon Skipping
Gene
ENSGALG00000001040 | MEGF6
Description
NA
Coordinates
chr21:999215-1000387:+
Coord C1 exon
chr21:999215-999346
Coord A exon
chr21:999570-999698
Coord C2 exon
chr21:999777-1000387
Length
129 bp
Sequences
Splice sites
3' ss Seq
TGCTCCTCTCTGCCCCACAGAGT
3' ss Score
10.02
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CAGGCTGCGAGGAGGGGACGTATGGGGAGGGATGCCGGCAGCGCTGTGACTGCGTGGGGAACGCACCCTGTGACCGCATCACGGGGCACTGCCTCTGTCCTCCGGGAAAAACCGGCCCCCGCTGTGACTCAG
Seq A exon
AGTGCCCTATGAACCGCTACGGCCCCGACTGCGCACTCACCTGCACCTGTGCCAGCAGCACTCAGTGCAGTGCCCGGACTGGCCGCTGTCACTGCCACCGTGGCTCCATGGGCTCCTCGTGCCGGGAAG
Seq C2 exon
CTGTGCCCGCCCAGGTGCCCACCAGGTCCCCAGCGCTGCAGGGGATGGAGCACTACGTCCTGCCACAGCCACAGGGCACTGCACAACTACACAAGCCAGCTGGAGGACTCGTTCCCAAGGCACTCGAGTGACAACCAGCTCATGGCAGATGGGAGCTGGGTGCTGCCTGGGCTGGACATGGGCTGTAGGGCTTCTCTGCGGCTGCTGGCCCTCACCTCGGGGTGTTGGGCACCGGGGTTGGAGGGAGAGGGTTGACATTATGGTTGAAAATAGGTATTTATTCAGTAATATTTATGGCAAGCTGTACCACAGCAGTGCAGGAGCTCTGCAGAGCTGCCACCTGCAGGGGGGAGAGCTGACCAAGGACCAATGCAGACACGGACATATGGGCACAAAGCTGTGGTGGTGGTCCTGAGTGCACAGGGATGGCCCCAGCCCATGGGGGCCAAAGAACTGTCTCCTTTCCAGGTGGAATCCCTTTTAATCTGTAAATAACTTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001040-'33-36,'33-35,34-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=73.3)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACGTATGGGGAGGGATG
R:
GTTGTCACTCGAGTGCCTTGG
Band lengths:
253-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]