MmuEX0028593 @ mm9
Exon Skipping
Gene
ENSMUSG00000057751 | Megf6
Description
multiple EGF-like-domains 6 [Source:MGI Symbol;Acc:MGI:1919351]
Coordinates
chr4:153644732-153649822:+
Coord C1 exon
chr4:153644732-153644860
Coord A exon
chr4:153645720-153645848
Coord C2 exon
chr4:153647917-153649822
Length
129 bp
Sequences
Splice sites
3' ss Seq
CCCACCTCCTGCCTCTACAGATT
3' ss Score
10.56
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GGTGCAAGCCAGGCTTTTTTGGAGATGGCTGCCTGCAGCAGTGTAACTGCCCCACGGGTGTGCCCTGTGATCCCATCAGCGGCCTCTGCCTTTGCCCACCAGGGCGTGCAGGAACCACATGTGACCTAG
Seq A exon
ATTGCAGAAGAGGCCGCTTTGGGCCGGGCTGTGCCCTGCGCTGTGATTGTGGGGGTGGGGCTGACTGCGACCCCATCAGTGGGCAGTGCCACTGTGTGGACAGCTACACGGGACCCACTTGCCGGGAAG
Seq C2 exon
TGCCCACACAGCTGTCCTCTATCAGACCAGCACCCCAGCACTCCAGCAGCAAGGCCATGAAGCACTAACTCAGAGGAACGCCCACAGAGGCCCACTACTGTGTTCCAGCCCAAGGGACCCAGGCCTCTGCTGGTGACTAAGATAGAGGTGGCACTTTTGGATCCACACCTCTTCTGGAAAGCCATGGATTGCTGTGGACAGCTATGGATAGTCATATAGCCACACACCCGGGCTCCATGGTCATGGGGAAGAAGGCCTCCTTTGGACACAAGGAATCCAGGAAGTCGGCTGGGCTTCGGGCCACTGTTTACATGGGGACCCTGCAGGCTGTGCTGTGGAATCCTGGCCCTCTTCAGCGACCTGGGATGGGACCAAGGTGGGAATAGACAAGGCCCCACCTGCCTGCCAGGTCCTTCTGGTGCTAGGCCATGGACTGCTGCAGCCAGCCAACTGTTTACCTGGAAATGTAGTCCAGACCATATTTATATAAGGTATTTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057751-'38-41,'38-40,40-41
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.636
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(34.8=36.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCAGGAACCACATGTGACC
R:
CCGGGTGTGTGGCTATATGAC
Band lengths:
255-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: