GgaEX6023699 @ galGal3
Exon Skipping
Gene
ENSGALG00000001040 | MEGF6
Description
NA
Coordinates
chr21:984283-984857:+
Coord C1 exon
chr21:984283-984408
Coord A exon
chr21:984490-984612
Coord C2 exon
chr21:984735-984857
Length
123 bp
Sequences
Splice sites
3' ss Seq
GCTGCTTCTCTCGGTCCCAGCCT
3' ss Score
6.18
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CGCTGAACTCGTGTGCGGTGAACAACGGTGGCTGCGAGCACGACTGCGTGCAGCTGACGGCCAACCAGCACCAGTGCCGCTGCCGCCGGCAGTATCGGCTGCGGGAGGACGGCCGGCGCTGCGCCC
Seq A exon
CCTGGAGCCCCTGCGCTCAGAGGAACGGGGGCTGCATGCAGCTCTGCAGGGATGTCCAGGGAGCAGCGCGCTGCGAGTGCCGCCCCGGATACCGGCTGGGACCTGATGGCAGAGCCTGCCAAG
Seq C2 exon
ATGTGGATGAGTGCTTGGCCGGCCTGGCCACGTGTGCACACCGCTGCCTGAACACCCACGGCTCCTTTATGTGTGCCTGCAACCCGGGCTATGAGCTGGGAGCGGACAGCAGGCAGTGCTACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001040-'1-3,'1-2,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=85.7),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF146701=FXa_inhibition=WD(100=85.7),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF146701=FXa_inhibition=WD(100=76.6),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAACTCGTGTGCGGTGAAC
R:
CACTGCCTGCTGTCCGCT
Band lengths:
242-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]