GgaEX6027198 @ galGal3
Exon Skipping
Gene
ENSGALG00000000252 | Q8AV15_CHICK
Description
NA
Coordinates
chr27:1540021-1541915:-
Coord C1 exon
chr27:1541793-1541915
Coord A exon
chr27:1541314-1541592
Coord C2 exon
chr27:1540021-1540074
Length
279 bp
Sequences
Splice sites
3' ss Seq
ATGGTTGTCTCTCCTTGCAGGTG
3' ss Score
12.67
5' ss Seq
GTGGTACGT
5' ss Score
8.61
Exon sequences
Seq C1 exon
GTCTCCCTCATCAGCCTGACAGCCAACTGGTTGGGATACTCCGAGCTGGGAGCCATCAAATCCCTGCGGACACTGAGAGCACTGAGACCTCTGCGTGCCCTGTCCAGATTTGAAGGCATGAGG
Seq A exon
GTGGTGGTAAATGCCTTGTTGGGTGCCATCCCCTCCATCATGAACGTCCTGCTGGTCTGCCTCATCTTCTGGCTGATATTCAGCATCATGGGGGTGAACCTCTTCGCAGGGAAGTACTACCGATGCGTCAACACCACCACGGGGGACCTCTTTGACATCAGCGTGGTGAACAATAAGAGCGACTGCATGGCTCTCCTCCACACCAACGAGGTCAGATGGGTCAACGTCAAAGTCAACTTCGACAACGTGGGCTTGGGATACCTGTCCTTGCTGCAGGTG
Seq C2 exon
GCGACCTTCAAAGGTTGGATGGACATCATGTACGCTGCTGTGGACTCACGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000252-'23-25,'23-24,24-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(23.0=100)
A:
PF0052026=Ion_trans=FE(52.9=100)
C2:
PF0052026=Ion_trans=PU(31.5=94.4),PF116463=DUF3258=PU(16.0=72.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCCCTCATCAGCCTGACA
R:
GTGAGTCCACAGCAGCGTAC
Band lengths:
172-451
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]