RnoEX6050164 @ rn6
Exon Skipping
Gene
ENSRNOG00000012134 | Scn4a
Description
sodium voltage-gated channel alpha subunit 4 [Source:RGD Symbol;Acc:3636]
Coordinates
chr10:94511432-94513616:-
Coord C1 exon
chr10:94513494-94513616
Coord A exon
chr10:94511725-94512003
Coord C2 exon
chr10:94511432-94511485
Length
279 bp
Sequences
Splice sites
3' ss Seq
GACCCCAACCCCCACCCTAGGTG
3' ss Score
6.48
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GTCTCCATCATCAGCCTGGTGGCAAACTGGCTGGGCTACTCTGAGCTGGGGCCCATCAAATCCCTGCGCACACTCCGGGCCCTGCGACCTCTGAGGGCACTGTCTCGATTTGAGGGTATGAGG
Seq A exon
GTGGTGGTGAACGCCCTCCTGGGAGCTATCCCCTCCATCATGAACGTCCTCCTCGTCTGCCTCATCTTCTGGCTCATCTTCAGCATCATGGGGGTCAACTTGTTTGCTGGAAAGTTCTACTACTGCGTCAACACCACCACCTCTGAGAGATTCGACATCTCGGTGGTCAACAACAAGTCCGAGTGTGAGAGCCTCATGTATACAGGCCAGGTCCGCTGGATGAATGTCAAGGTCAACTACGACAACGTGGGTCTGGGCTATCTCTCCCTCCTTCAGGTG
Seq C2 exon
GCCACATTCAAGGGTTGGATGGATATCATGTATGCAGCTGTGGACTCCCGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012134-'27-24,'27-23,29-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(17.5=100)
A:
PF0052026=Ion_trans=FE(40.4=100)
C2:
PF0052026=Ion_trans=FE(7.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCCATCATCAGCCTGGTG
R:
GGGAGTCCACAGCTGCATACA
Band lengths:
172-451
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]