GgaEX6027565 @ galGal4
Exon Skipping
Gene
ENSGALG00000003256 | ATP6V0A1
Description
V-type proton ATPase 116 kDa subunit a isoform 1 [Source:RefSeq peptide;Acc:NP_990055]
Coordinates
chr27:4943343-4944833:+
Coord C1 exon
chr27:4943343-4943433
Coord A exon
chr27:4944181-4944299
Coord C2 exon
chr27:4944617-4944833
Length
119 bp
Sequences
Splice sites
3' ss Seq
GTTGTTTTTTTTTTCCACAGATC
3' ss Score
11.78
5' ss Seq
CATGTAAGG
5' ss Score
6.57
Exon sequences
Seq C1 exon
AGATGAATTGCTTAAGACTACTCCTCTGCTTCAGCTGGACCCTGCTGAAGCAGGAGTGTTTGGTGGACCCTATCCCTTTGGCATTGACCCG
Seq A exon
ATCTGGAATATTGCCAACAACAAACTGGCCTTCCTCAATTCATTTAAGATGAAAATGTCTGTGATTCTTGGCATTATCCACATGCTCTTCGGTGTCATGTTGAGTCTTCTCAACCACAT
Seq C2 exon
ATATTTTAAGAAGCCACTGAACATATACCTTGGGTTTATTCCAGAGATGATTTTCATGTCCTCACTGTTTGGATACCTTGTTATTCTCATTTTCTACAAATGGACAGCCTATGATGCTCACACATCAAAGGAAGCCCCAAGCCTTTTAATACATTTTATCAATATGTTTTTATTTTCCTATGGTGATACCAGTAACAAGATGCTTTATAGAGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003256-'25-28,'25-27,26-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(3.8=100)
A:
PF0149614=V_ATPase_I=FE(4.9=100)
C2:
PF0149614=V_ATPase_I=FE(10.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAAGCAGGAGTGTTTGGT
R:
AGCATCTTGTTACTGGTATCACC
Band lengths:
252-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]