RnoEX0013251 @ rn6
Exon Skipping
Gene
ENSRNOG00000036814 | Atp6v0a1
Description
ATPase H+ transporting V0 subunit a1 [Source:RGD Symbol;Acc:68405]
Coordinates
chr10:88944420-88947829:+
Coord C1 exon
chr10:88944420-88944510
Coord A exon
chr10:88946864-88946982
Coord C2 exon
chr10:88947613-88947829
Length
119 bp
Sequences
Splice sites
3' ss Seq
GTTTTCTGTCCTTGTAACAGATT
3' ss Score
9.17
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
GGAGGAGACGCTCCTGGGGAGTTCTGTCCTCCAGCTGAACCCAGCTATCCCTGGAGTCTTTGGTGGCCCTTACCCATTTGGCATTGATCCG
Seq A exon
ATTTGGAACATCGCAACCAACAAGCTGACCTTCCTCAACTCCTTCAAGATGAAGATGTCAGTTATTCTTGGGATCATCCACATGCTGTTCGGGGTCAGCCTGAGCCTTTTCAACCACAT
Seq C2 exon
CTATTTCAAGAAGCCCCTGAACATCTACTTTGGCTTTATTCCCGAGATAATCTTCATGTCCTCGCTGTTTGGCTACCTGGTCATCCTCATCTTTTACAAGTGGACAGCCTACGATGCCCACTCGTCTAGAAATGCCCCGAGCCTCCTGATCCATTTCATAAACATGTTCCTCTTCTCCTACCCAGAGTCTGGTAACGCAATGCTGTACTCTGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000036814-'31-34,'31-32,33-34
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(3.8=100)
A:
PF0149614=V_ATPase_I=FE(4.9=100)
C2:
PF0149614=V_ATPase_I=FE(9.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGTCTTTGGTGGCCCTTA
R:
GTCCAGAGTACAGCATTGCGT
Band lengths:
255-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]