GgaEX6027981 @ galGal3
Exon Skipping
Gene
ENSGALG00000002453 | ABCA7
Description
NA
Coordinates
chr28:2381597-2383625:-
Coord C1 exon
chr28:2383504-2383625
Coord A exon
chr28:2381961-2382112
Coord C2 exon
chr28:2381597-2381889
Length
152 bp
Sequences
Splice sites
3' ss Seq
GACCCGTCTGTGCTTTGCAGCGG
3' ss Score
8.9
5' ss Seq
CAGGTACGG
5' ss Score
10.88
Exon sequences
Seq C1 exon
AGAAAGGAGACCGGAGTGGGACGGTGGCTCCGTGCCCTCAGGGCGCACCATCATCCTCTCCACGCACTACATGGACGAGGCGGAGCTGCTGGGGGACCGCATCGCCATCATCTCGCAGGGCC
Seq A exon
CGGAGGAGCCGCAGGAGACGGATCTGCTGCGTGGAGCGGCCGGGGGCAGCCGGTGCGTGCGGGGCTGGGCGCTCACCCGGCAGCAGCTCCGCGCTCTCTTCACCAAACGACTGCTCCATGCCCGGCGCAGCACGCGGGGCTTCTTCGCCCAG
Seq C2 exon
ATCGTCCTGCCCGCTGCCTTCGTCTGCCTTGCGCTGCTCTTCAGCCTCATCGTGCCGCCCGTCGGGAAGTACCCAGCGCTGCGCCTGGAGCACGGGATGTACGGGCATCAGTTCACCTTCTTCAGGTGCGCGCACGGTCCCCGAGTGCTCTGCCCACCCCGGAGCCGCTGTCCCACGCGTGTGCCCTTTTGCAGCAATGACGCTCCGGGGGACGCGGACACGTCCCGGTTGTTGGCCGCCCTCCTGGCCGAGCCGGGCTTCGGCACCGCCTGCATGAAGGACGCGGCGGGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002453-'7-13,'7-12,14-13=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.190 A=0.186 C2=0.008
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAAGGAGACCGGAGTGGG
R:
AAGAAGGTGAACTGATGCCCG
Band lengths:
244-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]