GgaEX6027981 @ galGal4
Exon Skipping
Gene
ENSGALG00000002453 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr28:2827866-2828420:-
Coord C1 exon
chr28:2828356-2828420
Coord A exon
chr28:2828062-2828213
Coord C2 exon
chr28:2827866-2827990
Length
152 bp
Sequences
Splice sites
3' ss Seq
GACCCGTCTGTGCTTTGCAGCGG
3' ss Score
8.9
5' ss Seq
CAGGTACGG
5' ss Score
10.88
Exon sequences
Seq C1 exon
TGGCTATAACCCTGCTCTCCTCTCTCCTTACACTGAGCCCAAGGAGCCCGCAGAGGTAGGAATTG
Seq A exon
CGGAGGAGCCGCAGGAGACGGATCTGCTGCGTGGAGCGGCCGGGGGCAGCCGGTGCGTGCGGGGCTGGGCGCTCACCCGGCAGCAGCTCCGCGCTCTCTTCACCAAACGACTGCTCCATGCCCGGCGCAGCACGCGGGGCTTCTTCGCCCAG
Seq C2 exon
ATCGTCCTGCCCGCTGCCTTCGTCTGCCTTGCGCTGCTCTTCAGCCTCATCGTGCCGCCCGTCGGGAAGTACCCAGCGCTGCGCCTGGAGCACGGGATGTACGGGCATCAGTTCACCTTCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002453-'26-29,'26-28,27-29=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.478 A=0.098 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTATAACCCTGCTCTCCT
R:
AAGAAGGTGAACTGATGCCCG
Band lengths:
187-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]