DreEX6090527 @ danRer10
Exon Skipping
Gene
ENSDARG00000074221 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr11:5682944-5688698:+
Coord C1 exon
chr11:5682944-5683046
Coord A exon
chr11:5686186-5686334
Coord C2 exon
chr11:5688574-5688698
Length
149 bp
Sequences
Splice sites
3' ss Seq
GCTCTTTCTCTGGCACACAGAGG
3' ss Score
5.09
5' ss Seq
CAGGTACAT
5' ss Score
7.79
Exon sequences
Seq C1 exon
ATCTTTCTGCGTGTGGCAGAGGAGACTGGTGTGGATGCAGACCCAGGAGATGTGCCAGTGTCTCAAGAACCCCAGGGAGCGCCATCTGAGGACAGAGATGCGG
Seq A exon
AGGCTCAGGAGACAGATCCGCTGAGCGGGGATGGTCAGAGCGACAGCGCTCCTCTCACAGGCTGCTTCCACACATGTCAGCAGCTTCGAGCACTTTTCACCAAAAGACTGAAGTACGCTTTCCGCAGTCGCAGAGGGATTTTTGCACAG
Seq C2 exon
ATTGTTTTGCCTGCTGTTTTTGTTCTTATTGCTCTACTGTTCAGTCTCATTGTTCCACCGTTTGGGAAATATCCATCGCTGGAGCTCCAGCCGTGGATGTATGGAGAGCAGTTTACCTTCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074221-'24-26,'24-25,26-26=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.657 A=0.300 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000113281fB2
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGGCAGAGGAGACTGGT
R:
CTGAAGAAGGTAAACTGCTCTCCA
Band lengths:
218-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]