BtaEX6035688 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020661 | ABCA1
Description
Bos taurus ATP-binding cassette, sub-family A (ABC1), member 1 (ABCA1), mRNA. [Source:RefSeq mRNA;Acc:NM_001024693]
Coordinates
chr8:96300358-96303662:-
Coord C1 exon
chr8:96303549-96303662
Coord A exon
chr8:96302339-96302487
Coord C2 exon
chr8:96300358-96300482
Length
149 bp
Sequences
Splice sites
3' ss Seq
TTAGCGATGGCTTTTTGCAGAAT
3' ss Score
4.57
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
ATGGCACCTTACCAGCAAGACGAAACAGACGAGTCTTTGGGGACAAGCAGAGCTGTCTTCGCCCTTTTACTGAAGACGATGCTATGGATCCAAATGATTCTGACATAGATCCAG
Seq A exon
AATCCAGAGAAACAGACCTGCTCAGTGGGATGGATGGTAAAGGTTCCTACCAGGTGAAGGGCTGGAAGCTCACACAGCAGCAGTTTGTGGCCCTTTTGTGGAAGAGACTGCTGATTGCCAGACGGAGTCGGAAAGGATTCTTTGCTCAG
Seq C2 exon
ATTGTCCTGCCAGCTGTGTTTGTCTGCATCGCCCTGGTGTTCAGCTTGATTGTGCCACCCTTTGGCAAGTACCCCAGCCTGGAGCTTCAGCCCTGGATGTACAATGAACAGTACACATTTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020661-'35-37,'35-36,36-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.436 A=0.140 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF126982=ABC2_membrane_3=PU(1.1=12.0)
C2:
PF126982=ABC2_membrane_3=FE(7.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACCTTACCAGCAAGACGAA
R:
TGACAAATGTGTACTGTTCATTGT
Band lengths:
235-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]