GgaEX6050609 @ galGal3
Exon Skipping
Gene
ENSGALG00000015433 | E1C619_CHICK
Description
NA
Coordinates
chrZ:53615960-53617078:-
Coord C1 exon
chrZ:53616965-53617078
Coord A exon
chrZ:53616477-53616625
Coord C2 exon
chrZ:53615960-53616084
Length
149 bp
Sequences
Splice sites
3' ss Seq
TTCTTGTTTCTTGCTAACAGAAT
3' ss Score
8.52
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
ATGGGACATTGCCTGCCAGAAGGAACAGGCGTGCATTTGGAGACAGACAGAGCTGCCTTCGTCCATTTACAGAAGATGATGCATTTGACCCTAATGATTCAGACATTGATCCAG
Seq A exon
AATCCAGAGAGACTGATCTTCTCAGTGGCATGGATGGGAAAGGCTCCTACCAGATGAAGGGCTGGAAGCTCTCCCAGCAACAGTTCATGGCTCTGTTGTGGAAGAGGCTGCTTATTGCCAAGAGAAGCCGGAAGGGCTTCTTTGCTCAG
Seq C2 exon
ATTGTGCTGCCAGCTGTCTTTGTGTGTATTGCTCTCATGTTCAGTCTGATTGTTCCTCCCTTTGGGAAGTATCCCAGCCTGGAATTACAGCCCTGGATGTACGATGAGCAGTATACATTTATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015433-'36-50,'36-49,37-50=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.410 A=0.160 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGACATTGCCTGCCAGAAG
R:
TAAATGTATACTGCTCATCGTACATC
Band lengths:
234-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]