GgaEX6050609 @ galGal4
Exon Skipping
Gene
ENSGALG00000015433 | ABCA1
Description
ATP-binding cassette sub-family A member 1 [Source:RefSeq peptide;Acc:NP_989476]
Coordinates
chrZ:54563466-54564584:-
Coord C1 exon
chrZ:54564471-54564584
Coord A exon
chrZ:54563983-54564131
Coord C2 exon
chrZ:54563466-54563590
Length
149 bp
Sequences
Splice sites
3' ss Seq
TTCTTGTTTCTTGCTAACAGAAT
3' ss Score
8.52
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
ATGGGACATTGCCTGCCAGAAGGAACAGGCGTGCATTTGGAGACAGACAGAGCTGCCTTCGTCCATTTACAGAAGATGATGCATTTGACCCTAATGATTCAGACATTGATCCAG
Seq A exon
AATCCAGAGAGACTGATCTTCTCAGTGGCATGGATGGGAAAGGCTCCTACCAGATGAAGGGCTGGAAGCTCTCCCAGCAACAGTTCATGGCTCTGTTGTGGAAGAGGCTGCTTATTGCCAAGAGAAGCCGGAAGGGCTTCTTTGCTCAG
Seq C2 exon
ATTGTGCTGCCAGCTGTCTTTGTGTGTATTGCTCTCATGTTCAGTCTGATTGTTCCTCCCTTTGGGAAGTATCCCAGCCTGGAATTACAGCCCTGGATGTACGATGAGCAGTATACATTTATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015433-'40-56,'40-55,41-56=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.410 A=0.160 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGACATTGCCTGCCAGAAG
R:
TAAATGTATACTGCTCATCGTACATC
Band lengths:
234-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]