MmuEX6093488 @ mm9
Exon Skipping
Gene
ENSMUSG00000015243 | Abca1
Description
ATP-binding cassette, sub-family A (ABC1), member 1 [Source:MGI Symbol;Acc:MGI:99607]
Coordinates
chr4:53079903-53082777:-
Coord C1 exon
chr4:53082664-53082777
Coord A exon
chr4:53081559-53081707
Coord C2 exon
chr4:53079903-53080027
Length
149 bp
Sequences
Splice sites
3' ss Seq
TCCATTTGTGCTGCTTACAGAAT
3' ss Score
7.5
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
ATGGTACTTTGCCAGCAAGACGAAACAGACGGGCCTTCGGGGACAAGCAGAGCTGTCTGCACCCATTTACGGAAGATGATGCTGTTGATCCCAATGACTCTGACATAGACCCAG
Seq A exon
AATCCAGGGAGACCGACCTGCTCAGTGGGATGGACGGCAAAGGCTCCTACCAGCTGAAGGGCTGGAAACTCACCCAGCAACAGTTTGTGGCCCTTTTGTGGAAGAGGCTGCTGATTGCCAGACGGAGCCGGAAGGGTTTCTTTGCTCAG
Seq C2 exon
ATTGTCCTGCCAGCTGTCTTTGTTTGCATTGCCCTGGTCTTCAGCCTGATTGTGCCACCCTTTGGCAAGTACCCCAGCCTGGAACTTCAGCCCTGGATGTATAATGAGCAGTATACATTTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015243-'29-29,'29-28,30-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.462 A=0.120 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF126982=ABC2_membrane_3=PU(1.1=12.0)
C2:
PF126982=ABC2_membrane_3=FE(7.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTACTTTGCCAGCAAGACG
R:
TACTGCTCATTATACATCCAGGGC
Band lengths:
226-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: