DreEX6033529 @ danRer10
Exon Skipping
Gene
ENSDARG00000074635 | abca1a
Description
ATP-binding cassette, sub-family A (ABC1), member 1A [Source:ZFIN;Acc:ZDB-GENE-031006-12]
Coordinates
chr1:51974608-51975921:+
Coord C1 exon
chr1:51974608-51974721
Coord A exon
chr1:51974903-51975051
Coord C2 exon
chr1:51975797-51975921
Length
149 bp
Sequences
Splice sites
3' ss Seq
CTGCTGTGTGTAATCCTCAGAGT
3' ss Score
8.08
5' ss Seq
CAGGTACGG
5' ss Score
10.88
Exon sequences
Seq C1 exon
ACGGGACTCTGCCTGCACGCAGGAACCGCAGACATGCATTCGGGGACCATCAGAGCTGCTTGAAGCCTTTTACTGAAGACGACTTTGATTTCAACGACTCTGAAGGGGATCCAG
Seq A exon
AGTCTCGTGAGACTGACTGGTTGGATGGTGCTGATGGTAAAGGCTCGTATCAGGTGAAGGGCTGGAGTCTGAAGCGGCAGCAGTTTGTGGCTTTGCTCTGGAAACGTTTACTGTACGCCCGACGCTCACGCAAAGGTTTCTTTGCTCAG
Seq C2 exon
ATTGTGCTTCCCGCTGTGTTCGTGTGCATCGCTCTGGTCTTCAGCCTCATCGTTCCTCCTTTCGGGAAATATCCCAGCCTCGCTCTGGAGCCCAGCATGTATGAGGAGCAGTTCACCTTTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074635-'29-29,'29-28,30-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.231 A=0.140 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGGACTCTGCCTGCAC
R:
AAAGGTGAACTGCTCCTCATACA
Band lengths:
234-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]