DreEX6056961 @ danRer10
Exon Skipping
Gene
ENSDARG00000079009 | abca1b
Description
ATP-binding cassette, sub-family A (ABC1), member 1B [Source:ZFIN;Acc:ZDB-GENE-030131-9826]
Coordinates
chr14:6183171-6185366:+
Coord C1 exon
chr14:6183171-6183290
Coord A exon
chr14:6183377-6183525
Coord C2 exon
chr14:6185242-6185366
Length
149 bp
Sequences
Splice sites
3' ss Seq
GCTGTCTATTTGATCACCAGAAT
3' ss Score
5.42
5' ss Seq
CAGGTACAA
5' ss Score
7.09
Exon sequences
Seq C1 exon
ACGGAACTCTGCCGGTGCGCAGACAGAGACGACATGCATTTGGTGCTGATCACCAGAGCTGCCTGAAACCCCTGACCGAAGACGATAGCTTTGACTGCAATGAATCTGAGGGTGATCCAG
Seq A exon
AATCCAAAGAAACTGACTATTTGAGTGGGTCAGATGGCAAAGGATCATATCAGGTGAAAGGCTGGAGTCTGAAGAGGCAGCAGTTTGTGGCTTTATTATGGAAGAGACTGCTTTACGCTCGCCGCTCTAGGAAAGGATTCTTTGCACAG
Seq C2 exon
ATCGTTCTTCCTGCTGTGTTTGTGTGCATCGCTCTGGTATTCAGTCTCATTGTGCCGCCATTTGGGAAATATCCCAGCCTGGCTCTTAATCCCTGGATGTATGAAGAGCAGTTCATGTTCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079009-'33-36,'33-35,34-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.268 A=0.180 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGAACTCTGCCGGTGC
R:
AAGAACATGAACTGCTCTTCATACA
Band lengths:
242-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]