MmuEX0003015 @ mm10
Exon Skipping
Gene
ENSMUSG00000035722 | Abca7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:MGI Symbol;Acc:MGI:1351646]
Coordinates
chr10:80007136-80007778:+
Coord C1 exon
chr10:80007136-80007228
Coord A exon
chr10:80007430-80007451
Coord C2 exon
chr10:80007654-80007778
Length
22 bp
Sequences
Splice sites
3' ss Seq
TTTCTGCTTGCTCGCCGCAGCCG
3' ss Score
7.82
5' ss Seq
CAGGTGACC
5' ss Score
6.54
Exon sequences
Seq C1 exon
GTGGGGACTCTAGACCGCAGCTGCACCTTCGCACATGCACTCCACAGCCCCCCACAGGGCCAGAGGCATCAGTTCTGGAGAATGGGGAGCTGG
Seq A exon
CCGCCGGGGCCTGTTTGCACAG
Seq C2 exon
GTTGTGTTGCCTGCCCTCTTTGTGGGCCTGGCCCTGTTCTTCAGCCTCATTGTGCCTCCTTTTGGCCAGTACCCACCCCTGCAGCTCAGCCCTGCTATGTATGGCCCTCAGGTCTCGTTCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035722-'43-55,'43-54,44-55
Average complexity
S*
Mappability confidence:
100%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.823 A=0.000 C2=0.048
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAGGCATCAGTTCTGGAG
R:
GTGGGTACTGGCCAAAAGGAG
Band lengths:
110-132
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types