BtaEX6040218 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020766 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr7:45173965-45174643:+
Coord C1 exon
chr7:45173965-45174069
Coord A exon
chr7:45174145-45174299
Coord C2 exon
chr7:45174519-45174643
Length
155 bp
Sequences
Splice sites
3' ss Seq
GACCTTCCCATCCCCCACAGTTG
3' ss Score
9.41
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
ATGGTAGGCCCAGGCAGGGCCCGTGCTTGGGTATTGCTCATCCCGATGCGACTAGGAAGCTCCAGGTTCCGCCAGAAGAGACAGCCTTGGAGAATGGAGGGCTGG
Seq A exon
TTGGCTCTGCCCCTGAGACACAGGCACTACAGGGCTCTGGGCCGACCACCGCAGGCCTCGTACACAGCTGGGCGCTCACCTACCAGCAACTCCGGGCCTTACTTCTCAAGCGTTTCCTGCTTGCCCGCCGCAGCCGCCGTGGCCTGTTTGCTCAG
Seq C2 exon
ATTGTGCTACCTGCCCTCTTTGTGGGCCTGGCGCTGGTGTTCAGCCTCATTGCACCCCCATTTGGATACTACCCAGCTCTGCAGCTGAGCCCCAGCATGTATGGCTCCCAGGTGTCCTTCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020766-'27-30,'27-29,28-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.528 A=0.173 C2=0.048
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTGCTTGGGTATTGCTCAT
R:
CTGAAGAAGGACACCTGGGAG
Band lengths:
210-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]